[1] "ak" "gis" "lego_sales.rds"
[4] "movies" "office_ratings.csv" "phone.csv"
[7] "pvec_res.Rdata" "us" Filesystems &
Denny’s + LQ scraping
Lecture 14
Dr. Colin Rundel
Filesystems
Pretty much all commonly used operating systems make use of a hierarchically structured filesystem.
This paradigm consists of directories which can contain files and other directories (which can then contain other files and directories and so on).
Absolute vs relative paths
Paths can either be absolute or relative, and the difference is very important. For portability reasons you should almost never use absolute paths.
Absolute path examples
Relative path examples
Special directories
Home directory and ~
Tilde (~) is a shortcut that expands to the name of your home directory on unix-like systems.
[1] "ansible" "Applications" "Books" "Calibre Library"
[5] "Desktop" "Documents" "Downloads" "Dropbox"
[9] "Edward Jones" "Google Drive" "Icon\r" "Library"
[13] "Movies" "Music" "My Drive" "opt"
[17] "OrbStack" "Pictures" "Public" "Scratch"
[21] "Sites" "Sync" "tm-log.sh" "tmp" If you append a user’s login to ~, it then refers to that user’s home directory (e.g. ~cr173).
Why ~?
Below is the keyboard from an ADM-3A terminal from the 1970s,
Working directories
R (and OSes) have the concept of a working directory, this is the directory where a program / script is being executed and determines the absolute path of any relative paths used.
RStudio and Working Directories
Just like R, RStudio also makes use of a working directory for each of your sessions - we haven’t had to discuss these yet because when you use an RStudio project, the working directory is automatically set to the directory containing the Rproj file.
This makes your project portable as all you need to do is to send the project folder to a collaborator (or push to GitHub) and they can open the project file and have identical relative path structure.
here
Thus far we’ve dealt with mostly simple project organizational structures - all the code has lived in the root directory and sometimes we’ve had a separate data directory for other files. As organization gets more complex to known what the working directory will be for a given script or RMarkdown document.
here is a package that tries to simplify this process by identifying the root of your project for you using simple heuristics and then providing relative paths from that root directory to everything else in your project.
Rules of here::here()
The project root is established with a call to
here::i_am(). Although not recommended, it can be changed by callinghere::i_am()again.In the absence of such a call (e.g. for a new project), starting with the current working directory during package load time, the directory hierarchy is walked upwards until a directory with at least one of the following conditions is found:
contains a file .here
contains a file matching [.]Rproj$ with contents matching ^Version: in the first line
contains a file DESCRIPTION with contents matching ^Package:
contains a file remake.yml
contains a file .projectile
contains a directory .git
contains a file .git with contents matching ^gitdir:
contains a directory .svn
In either case, here() appends its arguments as path components to the root directory.
Other useful filesystem functions
dir()- list the contents of a directorybasename()- Removes all of the path up to and include the last path separator (/)dirname()- Returns the path up to but excluding the last path separatorfile.path()- a useful alternative topaste0()when combining paths (and urls) as it will add a/when necessary.unlink()- delete files and or directoriesdir.create()- create directoriesfspackage - collection of filesystem related tools based on unix cli tools (e.g.ls)
Denny’s and LQ Scraping
Demo
Sta 523 - Fall 2023
Filesystems & Denny’s + LQ scraping Lecture 14 Dr. Colin Rundel